tag:blogger.com,1999:blog-3342041114052632712.post2796508663259032114..comments2024-01-20T16:39:42.179+11:00Comments on PhyloBotanist: Comparison of species tree methodsAlex SLhttp://www.blogger.com/profile/00801894164903608204noreply@blogger.comBlogger4125tag:blogger.com,1999:blog-3342041114052632712.post-23560541736584216782014-01-11T10:28:55.142+11:002014-01-11T10:28:55.142+11:00Thanks for the input on STRAW, I was not aware of ...Thanks for the input on STRAW, I was not aware of that. When there are branch lengths I tend to assume that they mean something...Alex SLhttps://www.blogger.com/profile/00801894164903608204noreply@blogger.comtag:blogger.com,1999:blog-3342041114052632712.post-48054356260402322652014-01-09T06:30:40.722+11:002014-01-09T06:30:40.722+11:00Thanks for the useful review. I'd add a couple...Thanks for the useful review. I'd add a couple of remarks: <br /><br />Another important limitation of STEM is that gene trees have to fit a molecular clock.<br /><br />Also, in STRAW, only the MP-EST method is supposed to estimate meaningful branch lengths. This could well be the cause of your odd results.E Ascarrunzhttps://www.blogger.com/profile/10831718023466138476noreply@blogger.comtag:blogger.com,1999:blog-3342041114052632712.post-61703318719584582992013-10-15T17:40:13.232+11:002013-10-15T17:40:13.232+11:00In case somebody finds this and wonders: Yes, I kn...In case somebody finds this and wonders: Yes, I know about SNAPP and iGTP now but do not have the time to try them out. I will update the post when I have.Alex SLhttps://www.blogger.com/profile/00801894164903608204noreply@blogger.comtag:blogger.com,1999:blog-3342041114052632712.post-69285860593320871712013-04-25T04:10:19.140+10:002013-04-25T04:10:19.140+10:00Here is an interesting blog, which gets beyond my ...Here is an interesting blog, which gets beyond my pay grade most of the time.<br />http://phylonetworks.blogspot.com/Jim Thomersonnoreply@blogger.com